Genome Annotation Transfer Utility (GATU)
...se with viral genomes, GATU can also be used to help annotate larger genomes (ie. bacterial genomes). The output is saved in GenBank, XML, or EMBL file format.2546 days ago
2546 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...nsistently very high sensitivity and precision across different error profiles, rates and sequencing techno...construction of a transcriptome from a given genomic reference and a GTF file. ...and muc...2537 days ago
Genetic-mapper: SVG Genetic Map Drawer
...etic/linkage map in Scalable Vector Graphics (SVG) format. The resulting file can either be submitted for p...ftware like Inkscape and Abobe Illustrator(R). The input file must be a text file with at l...2525 days ago
2518 days ago
2500 days ago
2475 days ago
orthodotter: Synteny plots (oxford grid)
...odotter - Plot orthologous genes on an oxford grid. -f <file> : input file, containing orthologous genes...number of genes in a cluster to be valid. -o <file> : output file, defaul...2474 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...ality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output...s, which contains good reads, bad reads and the QC results of each fastq file/pair.Currently it supports pr...2378 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
...lusters, sequence-heterogeneous clusters, etc). Many of these additional sources may optionally applied. simNGS takes fasta format sequences and a file describing the covariance of...2363 days ago