Software packages for next gen sequence analysis
...the Illumina Sequence Analyzer output that uses the probability files instead of the sequence files as an input for alignment to...+) * SISSRs - Site Identification from Short Sequence Reads. BED file input. Raja Jothi @ NIH. Perl...3255 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...ion sequencing and microarray file format as well as text files...paired-end sequencing Input: files with read alignment can be S..., sam.zip, bam.zip reference file must be aligned to the data f...ases and remove all temporary files, and generates the output fi...2921 days ago
2887 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...Entrez Gene ID (UIDs) or Official gene symbols as a input. GeneSCF supports more organisms from V1.1. Examples to download database as simple text file using GeneSCF "prepare_databa...2884 days ago
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Genome Assembly Tools and Software - PART1 !!
...e assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...re not present in the contigs file, Bandage opens up new possibi...ne Perl script and additional files van be downloaded below. The...2698 days ago
Source Code and Pseudo Code !!
...indented. These include while, do, for, if, switch. Examples below will illustrate this notion. GUIDE TO PSEUDOCODE LEVEL OF DETAIL: Given record/file descriptions, pseudocode shou...2672 days ago
Perl Special Vars Quick Reference
...eparators $. Current line number (or record number) of most recent filehandle. $/ Input record...tch. $^D Current value of debugging flags $^F Maximum system file descriptor. $^I Value o...2657 days ago