Results for "Format"
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Entrez Direct: E-utilities on the UNIX Command Line
...erations are combined to build multi-step queries. Record retrieval and formatting normally complete the pro...document summaries or other results that are returned in structured XML format. This can eliminate the need...2749 days ago
- .... ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignm...
2734 days ago
Maq: Mapping and Assembly with Quality
...ects/maq/. Maq is previously known as mapass2. Run Maq Now Follow these steps to try Maq. All you need is a reference sequence file in the FASTA format. Prepare a reference seque...2715 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three in...e SA coordinates of the input reads and generates alignments in the SAM format given single-end reads, align...
2706 days ago
- ...r of files as input. If no input file is specified, fqtools will attempt to read data from stdin. In this case, it is advisabe to specify the format of the data provided. For sub...
2699 days ago
- ...t tools for each step as well as new complementary tools tailored for ancient DNA data within a single integrated solution in an easily accessible format. https://genomebiology.biome...
2696 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...AMerge is a perl based wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA format to produce an improved contig...2688 days ago
- ...mbles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If amplification primers...
2653 days ago
- ...vances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepte...s is stored in the form of Mutation Annotation Format. This package attempts to sum...in-house studies as long as the data is in MAF format. Maftools can also handle ICG...
2629 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...2Fjournal.pone.0047768PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft ass...2618 days ago
