GroopM: Metagenomic binning toolset
...l coverage) to accurately (and almost automatically)extract population genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. Use: groopm -h for more info...2622 days ago
2563 days ago
Perlbrew: admin-free perl installation management tool.
perlbrew is an admin-free perl installation management tool. The latest version is 0.79, read the re...mething else: # Linux \wget -O - https://install.perlbrew.pl | bash # FreeBSD \fetch -o- https://instal...2495 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...nt pieces of DNA. The Basic Local Alignment Search Tool (BLAST) has revolutionized the field of bioinformatics, and is currently implemented in all free and commercial bioinformatics...2482 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating...2342 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a F...2333 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...ell Systems, 2016) and Juicebox (Durand & Robinson et al., Cell Systems, 2016), as well as additional dependencies noted below. Feel free to post your questions and co...2326 days ago
mojolicious: a next generation web framework for the Perl programming language.
...10.1 can be used too, but may require additional CPAN modules to be installed) Fresh code based upon years of experience developing Catalyst, free and open source. Hundreds of...2311 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary n...2285 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a fast algorithm for all-against-all comparisons of short reads and theoretical analyses...2256 days ago