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CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free me...2894 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome ass...an option to estimate insert size distributions from data. Scarpa is available free of...
2867 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy...lead to wrong prediction of initial exons in most cases. http://genome.crg.es/courses/Bioinformatics2003_genefindin...
2823 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome as...2788 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-...p://www.cs.rpi.edu/~magdon/ps/conference/super_biokdd.pdf https://ocw.mit.edu/courses/biology/7-91j-foundations-of-...2715 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome as...
2649 days ago
GroopM: Metagenomic binning toolset
GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accuratel...n genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. U...2630 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of bacterial sequ...
2571 days ago
- https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2014/lecture-slides/MIT7_91JS14_Lecture6.pdf
2505 days ago
Perlbrew: admin-free perl installation management tool.
perlbrew is an admin-free perl installation management tool. The latest version is 0.79, read the release note:&n...t something else: # Linux \wget -O - https://install.perlbrew.pl | bash # FreeBSD...2503 days ago
