2631 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script lin...2629 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible w...® data, in addition to PacBio's own SMRT® Analysis suite. All packages are belie...sed alignment Consensus and variant calling RNA analysis Epigenetic base modification...2621 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datas...more cell types. By automatically computing state enrichments for large-scale function...2587 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide exper...ly contains a large collection of diverse gene set libraries available for analysis and download. In total, Enric...2579 days ago
2572 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and pl...el process that includes prediction of protein-coding genes, as well as other function...2560 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those i.... The precision is further increased by mapping inversions as small as 31 bp. Analysis of the predicted evolutionary...2558 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes as...n a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information suc...2553 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct s...2552 days ago