Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs...of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites cont...2622 days ago
2620 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 3...2617 days ago
2616 days ago
ChromHMM: Chromatin state discovery and characterization
...pes. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates...mHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visuali...2573 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is bas...ce assemblies (PacBio) can be found here. RATT, a tool to transfer the annotation from a reference genome, or a...2550 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate ba...oding genes, as well as other functional genome units such as structur...automatic prokaryotic genome annotation pipeline that combines a...NCBI Handbook chapter. NCBI's annotation pipeline depends on several i...2546 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy...bility of automated and comprehensive CAZyme annotation of a given genome submit...2533 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using geno...es researchers from tedious manual annotation of these sequences. The prog...ther be accepted for/rejected from annotation. GATU can handle multiple-exo...2533 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2501 days ago