DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene...led. This software distribution includes both the DAGchainer utility and a Java-base...2632 days ago
2615 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to ann...2595 days ago
WGS Celera Assembler version 8.3rc2
.../ Jellyfish 2.0], [https://github.com/pbjd/pbutgcns PBUTGCNS], [https://github.com/Pacif...cBio-rwxrwxr-x 1 urbe urbe 540K Apr 10 11:41 ctgcns-rwxrwxr-x 1 urbe urbe 162K...cR-rwxrwxr-x 1 urbe urbe 2,9M Apr 10 11:41 pbdagcon-rwxrwxr-x 1 urbe urbe 1,9M...2580 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
.../software/PBcR/data/selfSampleData.tar.gz | tar zxf - ln -s selfSampleData/pacbio_filtered.fastq reads.fq # Install minimap and miniasm (requiring gcc and zlib) git clone https:/...2349 days ago
MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a sin...2343 days ago
2336 days ago
Mash: fast genome and metagenome distance estimation using MinHash
...eases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is available in and GCC >= 4.8 and OSX >= 10.7...2334 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailo...ilitate small scale genome analysis. To start using MGcV: Supply your genes/genomi...ult the documentation to learn more about MGcV.2286 days ago
2282 days ago