Results for "GO"
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Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic identification of orthologs for more than 90% of genes and intergen...2738 days ago
Maq: Mapping and Assembly with Quality
...l.pl to the $PATH or to the same directory. Simulate diploid reference and read sequences, map reads, call variants and evaluate the results in one go: maq.pl demo ref.fasta calib...2726 days ago
- GoJS is a feature-rich JavaScript...ern web browsers and platforms. GoJS makes constructing JavaScri...mizable templates and layouts. GoJS offers many advanced featur...system for custom operations. GoJS is pure JavaScript, so user...sp; More at http://gojs.net/latest/index.html
2726 days ago
- ...de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory...sequence reads. More at https://github.com/jts/sga SGA dependencies: -google sparse hash library (http...
2710 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage is also usef...2706 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse spec...2703 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...amination, chimeras, etc.), and presence of structural variant breakpoints within reads increases mapping and alignment complexity. We describe an algorithm that is up to 20 times f...2703 days ago
- ...;http://www.dyogen.ens.fr/genomicus while data can be downloaded at ftp://ftp.biologie.ens.fr/pub/dyogen/genomicus Contact: rf.sne.eigoloib@crh
2702 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness of both. GAM...2699 days ago
- .... In preliminary tests, pyScaf performed superbly on simulated heterozygous genomes based on C. pa...;16 CPUs. Important remarks: Reduce your assembly before (fasta2homozygous.py) as any redundancy will...
2698 days ago
