Laj: viewing and manipulating the output from pairwise alignment programs
.... It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites cont...2638 days ago
2636 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well...2633 days ago
2632 days ago
ChromHMM: Chromatin state discovery and characterization
...omatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates...ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visuali...2589 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...assembly. An improved version, especially correction Pacfic Bioscience assemblies (PacBio) can be found here. RATT, a tool to transfer the annotation from a reference genome, or a...2566 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate...romosomes and plasmids). Genome annotation is a multi-level process that...an automatic prokaryotic genome annotation pipeline that combines a...sp;NCBI Handbook chapter. NCBI's annotation pipeline depends on several i...2562 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...nbsp;DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy...AN provides the capability of automated and comprehensive CAZyme annotation of a given genome submit...2549 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using geno...es researchers from tedious manual annotation of these sequences. The prog...ther be accepted for/rejected from annotation. GATU can handle multiple-exo...2549 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2517 days ago