DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...rogram. The new engine can annotate a typical-sized bacterial genome within 10 minutes, with rich information such as pseudogenes, translation exceptions, and orthologous gene assignment between given refe...2376 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...erent species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displ...ancestral genome structure in all the ancestral species within the phylogenetic range of interest. All th...2371 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...s processes including insertion/deletion and inversion could cause the degeneration of CHSs. Results...re we present a Java software CHSMiner that detects CHSs based on shared gene content alone. It implements...2371 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...rmore, the assembly with the long nanopore reads presents a much more complete representation of the features of the genome and correctly assembles gene cassettes, rRNAs, transposabl...2361 days ago
Computational Genomics: Applied Comparative Genomics
...adly applicable across the tree of life. The topics will include genome assembly & comparative genomics, variant identification & analysis, gene expression & regulation,...2361 days ago
2361 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...ML (example) is an XML language designed to describe phylogenetic trees (or networks) and as...ides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch...2361 days ago
PASA: Gene Structure Annotation and Analysis
..., is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consiste...2333 days ago
Recovery of complete genomes from metagenomes
...red bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen, Philip Hugenholtz, Adam Skarshewski, Gene W. Tyson, Kåre L....2333 days ago
HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
HGT-Finder: (i) can be used for HGT detection in both prokaryotes and eukaryotes, (ii) can report a statistical P value for each gene to indicate how likely it is to be...2312 days ago