Results for "Gene Enrichments"
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Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, varia...2751 days ago
- Visualization has played an extremely important role in the current genomic revolution to inspect...dual reads (Supplementary Note 1). For example, here we show a gene fusion in the SK-BR-3 breast cancer cell line linking the genes CYTH1...
2749 days ago
- HybPiper was designed for targeted sequence capture, in which DNA...cing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of P...eq), and assigns them to target genes using BLASTx or BWA. The rea...sequence reads). When HybPiper generates s...
2735 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number...represent and compare unlimited numbers of genomes in a broad phylogenetic vie...
2693 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for generating...
2687 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a m...bial (bacterial and archaeal) gene finding program developed at...Prodigal is an extremely fast gene recognition tool (written in...y locates the 3' end of every gene in the experimentally verifie...2680 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq a...1122 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. Th...mplification primers were used (e.g., to isolate a variable region of the 16S gene, or th...
2655 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "an...correct annotations are not likely not have significant alignments with other gene annota...
2641 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons betwe...graphs and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene presen...
2631 days ago
