Results for "Gene enrichment"
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Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, vari...2758 days ago
- Visualization has played an extremely important role in the current genomic revolution to inspect...dual reads (Supplementary Note 1). For example, here we show a gene fusion in the SK-BR-3 breast cancer cell line linking the genes CYTH...
2756 days ago
- The eFORGE tool provides a method to view the tissue sp...ld in an EWAS study, and analyses whether there is enrichment for overlap of putative funct...s compared to matched background DMPs. It assesses enrichment on a per cell type basis, sin...
2748 days ago
- HybPiper was designed for targeted sequence capture, in which DNA...cing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of P...eq), and assigns them to target genes using BLASTx or BWA. The rea...sequence reads). When HybPiper generates...
2742 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number...represent and compare unlimited numbers of genomes in a broad phylogenetic vi...
2699 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for generating...
2694 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to d...o), predicting the biological roles of motifs (GOMo), measuring the positional enrichment of sequences for known motifs...
2692 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a m...bial (bacterial and archaeal) gene finding program developed at...Prodigal is an extremely fast gene recognition tool (written in...y locates the 3' end of every gene in the experimentally verifie...2687 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq...1128 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The...amplification primers were used (e.g., to isolate a variable region of the 16S gene, or t...
2662 days ago
