2517 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strate...cies. Input formats, automated data upload from the UCSC Genome Browser, gene annot...2493 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for recons...f genomes represented as sequences of genes (or synteny blocks) and prod...mes at the internal nodes of the phylogenetic tree. The phylogenetic tr...erest. Since version 2 MGRA supports gene inser...2488 days ago
2376 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to...rial genome within 10 minutes, with rich information such as pseudogenes, translation exceptions, and orthologous gene assig...2376 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dim...ronologicaly along evolutionary time. Once a query gene has been entered, it is displ...ucture in all the ancestral species within the phylogenetic ra...2371 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and b...insertion/deletion and inversion could cause the degeneration of CHSs. Results...software CHSMiner that detects CHSs based on shared gene conte...2371 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing D...complete representation of the features of the genome and correctly assembles gene casse...2361 days ago
Computational Genomics: Applied Comparative Genomics
...pplicable across the tree of life. The topics will include genome assembly & comparative genomics, variant identification & analysis, gene expression & regulation, personal ge...2361 days ago
2361 days ago