DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...AGchainer software computes chains of syntenic genes found within complete genome...accounts for the distance between neighboring genes on each DNA molecule and the...vely, by examining colinear sets of homologous genes found within a single genome,...2632 days ago
2618 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...so to annotate the plots with taxonomic information. Different sets of annotations, including taxonomic assignments from conserved marker genes or SSU rRNA genes, can be imported simultaneous...2595 days ago
DeCoSTAR - Detection of Co-evolution
...neighborhood relations -adjacencies- between pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from r...DeCoSTAR is able to reconstruct the histories of domains inside genes, including gene fusion and fi...2576 days ago
ERGO 2.0 Bioinformatics suites
...nomic database integrated with the largest collection of microbial metabolic and non-metabolic pathways, ERGO™ assigns functions to genes, integrates genes into pathways, and identifies...2544 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...ion is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and...2544 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...p computer for microbial datasets. It also facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from mobile elements (plasmid...2537 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...all the relevant full-length CAZyme proteins in all sequenced genomes; dbCAN provides the most complete set of metagenomic CAZyme genes published so far and represen...2531 days ago
Genome Annotation Transfer Utility (GATU)
...e sequences. The program utilizes tBLASTn and BLASTn algorithms to map genes from the reference genome (th...strain). The goal is to annotate the majority of the new genome’s genes in a single step. ORFs presen...2531 days ago
2504 days ago