Results for "Genetic Code"
Top-level pages
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Island...http://dna.cs.byu.edu/bio465/Labs/hmm.shtml Source code with explanation http://www.t...hical version please visit http://www.planet-source-code.com/vb/scripts/ShowCode.asp?t...3826 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-G&oacut...equencing data. Auer & Doerge, Genetics 185(2):405-16, 2010. PubMedC...nterest] Detecting and annotating genetic variations using the HugeSeq...otyping by sequencing Genome-wide gene...3780 days ago
List of bioinformatics open source projects/software.
...latform Tool for designing and executing phylogenetic workflows AutoDock http://a...Ruby language toolkit BioSmalltalk https://code.google.com/p/biosmalltalk/ Smal...era T-REX WebServer Bioinformatics and phylogenetics webserver (NJ, PhyML, RAx...3758 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ss/CDPOP CDPOP is a landscape genetics tool for simulating the emergence of spatial genetic structure in populations resu...ulates interactions among two genetic and one environmental factor...Coalescent Simulations http://code.google.com/p/mlcoalsim-v1/ms The...3738 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding S...by PDB identifier or ligand 3 letter code e.g. NAD. Each binding site h...se results can be accessed by the PDB code or ligand name. KBDOCK: http...attributes of proteins. Data, source code, and prediction visualization...3745 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformatici...rl one-liners are small and awesome Perl programs that fit in a single line of code and they do one thing really...3629 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS...u cache the data locally, or check versions if your code will be adversely affected by...Bayesian statistical methods. The following sample code introduces the identification...3625 days ago
Commercial and public next-gen-seq (NGS) software
...H. from the Max-Planck-Institute for Molecular Genetics. SSAKE - The Short Sequence...CHiP-Seq, Bis-Seq, CNV-Seq BS-Seq - The source code and data for the "Shotgun Bis...n collaboration with Gordon Robertson. Current code and implementation by Anthony...3520 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run...
3550 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing file...detailed information such as Gene Ontology, mutant phenotype, and protein and gene...3542 days ago
