Results for "Genome"
Bookmarks
...S-based mode) synteny to the genome of some related species (refe...e, pyScaf uses synteny to the genome of closely related species in...bly on simulated heterozygous genomes based on C. parapsilosi...divergence between reference genome and assembled contigs is belo...2706 days ago
- ...system for constructing multiple genome alignments in the presence of...rangement and inversion. Multiple genome alignments provide a basis fo...arative genomics and the study of genome-wide evolutionary dynamics....le, a pair of Y. pestis genomes can be aligned in under a mi...
1983 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap...-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast, real genomes often have long repetitive r...
2705 days ago
- ...program that can simultaneously scan multiple genomes to identify homologous chrom...ting the synteny correspondences in Plant Genome Duplication Database. It is i...ify conserved gene arrays both within the same genome and across different genomes....
2703 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...on tool (written in very vanilla C). It can analyze an entire microbial genome in 30 seconds or less. Accur...der 5%. GC-Content Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perfect mat...2696 days ago
- ...Accurately Reconstructing Single Genomes from Complex Microbial Commu...lex microbial communities, or metagenome binning, enables the study of...ere we developed an automated metagenome binning software, called Meta...04 human gut samples formed 1,634 genome bins (>200kb) in 3 hours,...
2629 days ago
- ....0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requireme...nt 150GB+ of memory on at least one machine when aligning mammal-sized genomes; less memory is needed for s...
2677 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...he number of completely sequenced genomes is continuously rising, allo...analyses are often based on whole-genome alignments to elucidate struc...tational tools that can visualize genome alignments in a meaningful ma...formatics/article/28/12/i7/268598/GenomeRing-alignment-visualization-b...2676 days ago
- ...64-bit Linux systems. Binaries and sample data are freely available for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome.wustl.edu/people/groups/detai...
2674 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindb...on, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome analysis and interpretation....
2674 days ago
