Results for "Genome"
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...n-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...n-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...2880 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAE...sembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome is represented by those piece...
2879 days ago
CovCal: Coverage / Read Count Calculator
...e (or vice versa). Instructions: set the read length/configuration and genome size, then select what you wa...eads as N=CG/L where C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of...2163 days ago
- ...d identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...e matches to calculate a lineage probability index (LPI) score for each genome protein. LPI scores are inve...
2871 days ago
- ...tween organisms, is crucial for genetic innovation and the evolution of genome architecture. Existing HGT de...red sequence from ancestral (vertically derived) genes in its recipient genome. Detecting HGT between closel...
2871 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate...
2870 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers)...interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-wide maps of interactions bet...
2866 days ago
- ...tforms. Currently CSBB provides 13 modules focused on analytical tasks like performing upper-quantile normalization on expression data or convert genome wide gene expression to z-sco...
2864 days ago
Bioinformatics tools and software
...es. UCHIME >Chimeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes. QSCORE >Compare two...2858 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other feature...
2850 days ago
