Results for "Genome Size"
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Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal...mapping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate geno...2882 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biol...asks like performing upper-quantile normalization on expression data or convert geno...
2880 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than B...Chimeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial geno...2874 days ago
- ...affolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read ma...include support for multiple libraries and an option to estimate insert size distributions from data. Scar...
2866 days ago
- ...unction WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled...enerates a configuration file that notably specifies the average insert size of the mate-pair library prep...
2866 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for di...tion using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...esults, but the method gains power across geno...
2811 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between ...GFF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...p;a program for aligning sequences to reference geno...
2812 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaf...ied by mate-pairs. Such sources of information include alignment to a reference geno...
2832 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical...d for the creation of high-quality, detailed circular maps of organellar genomes like the plastid geno...
2832 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to ide...of the post-treatment depends on the availability of a reference geno...
2832 days ago
