MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
...2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supports biologica...2054 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2,...2050 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...close to each other, in the same order, across a wide range of taxa. CSBFinder incorporates an efficient algorithm that identifies CSBs in large genomic datasets. The discovered CSBs...2028 days ago
vcfR: a package to manipulate and visualize VCF data in R
...ntrol or other purposes. Additional functions provide visualization of genomic data. Once processing is comp...tween VCF data and the R environment connecting familiar software with genomic data.2027 days ago
Scribl : HTML5 canvas genomics graphic library
Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file.2027 days ago
QUAST-LG: Versatile genome assembly evaluation
QUAST-LG-a tool that compares large genomic de novo assemblies against reference sequences and computes relevant quality metrics. Since genomes generally cannot be reconstructed compl...2027 days ago
swgis v2.0 : a seqword genomic island sniffer
...0 is the modified version of the seqword genomic island sniffer. this version is specifically optimized for predicting genomic islands in eukaryotic genomes...species of different lineages. all identified genomic islands were deposited in the...2020 days ago
2012 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basic manipulation of region sets extending the functionality of GenomicRanges and a powerful and cust...1980 days ago
Genome sequence-based (sub-)species delineation.
...niversal and accurate delineation of prokaryotic (sub-)species without inheriting the pitfalls of classic DDH, and also calculates differences in genomic G+C content. http://ggdc.dsm...1979 days ago