Useful Publications and Websites for Deep Sequencing Data Analysis
...libraries. Aird et al, Genome Biology 12:R18, 2011 Full Text Amplif...-Seq reads. Martin et al, BMC Genomics 11:663, 2010 Full Text De no...ata. Anders and Huber, Genome Biology 11:R106, 2010 Full Text edgeR...source PLAZA: a comparative genomics resource to study gene and g...3777 days ago
List of bioinformatics open source projects/software.
.../archive/2011/10/18/microsoft-biology-foundation-evolves-into-new-to...plication") http://wolbachia.biology.virginia.edu/WuLab/Software.html Metagenomics analysis software Anduril h...p genome browser Integrative Genomics Viewer (IGV) http://www.bro...3755 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework...Lib is a C++/Python library and program package for evolutionary genetics and genomic...3735 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction...Lab in the Department of Computational and System Biology at the University of Pittsbur...of depth can be found here. FINDSITE: http://cssb.biology.gatech.edu/findsite FIN...3742 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bio...nd wrangle around massive amounts of genomics text. There are several "stan...regexp. Reference/Sources: http://genomics-array.blogspot.in/2010/11/som...c-for-your-gene-annotations/ http://genomic...3626 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings...er BiocViews HT-Seq Data Visualization ggbio: ggplot2 extension for genomic...3623 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and referen...interactive and reproducible genomics. A job webportal. Genomatix -...Sequencing data analysis. JMP Genomics - Next gen visualization and...is Ruiqiang Li at the Beijing Genomics Institute. C++, POSIX. SSAHA...3517 days ago
Apps for Busy Bioinformatics Researchers !!!
...filiation with the Computational Biology Center at Memorial Sloan-Kette...cs. Visit http://voyager.completegenomics.com to signup. More @ ...Institutes of Health, NASA Astrobiology Institute, and Science Founda...o create a music melody from DTC-Genomics data. If you own 23andMe (Mo...3539 days ago
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List of Biotechnology Research Laboratory, University, and Centre in India
...B - Indian Institute of Chemical Biology, Calcutta IIP - Indian Insti...tre for Cellular & Molecular Biology, Hyderabad CECRI - Central...Hyderabad IGIB - (Institute of genomics and Integrative Biology) I...entre for Cellular and Molecular Biology Environment Protection Trai...2569 days ago