miniasm: very fast OLC-based de novo assembler for noisy long reads
...embly size is 105Mb; the N50 is 1.94Mb. In comparison, the HGAP3produces a 104Mb assembly with N50 1.61Mb. This dotter plot gives a global view of the miniasm assembly...2364 days ago
2362 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...only some moderately conserved regions and/or have a high frequency of long insertions or deletions. It attempts to combine the best of local and global alignments algorithms in sear...2354 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer similarirty and the point of differences between pair of sequences. FOGSAA is a fast Global alignment algorithm. It is basically...2352 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
...d and implemented a graph FM index (GFM), an original approach and its first implementation to the best of our knowledge. In addition to using one global GFM index that represents a p...2202 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wunsch alignme...2160 days ago
genoPlotR - plot gene and genome maps project!
...the plot Add annotations to all the lines Create smart, automatic annotations for genomes, based on gene names Add a user-generated tree Add a global scale or a scale to each line...1984 days ago
ITIS: the Integrated Taxonomic Information System!
... agencies (ITIS-North America); other organizations; and taxonomic specialists. ITIS is also a partner of Species 2000 and the Global Biodiversity Information Faci...1722 days ago
modelStudio: a package automates the explanation of machine learning predictive models
...tions in the form of a serverless HTML site. It combines R with D3.js to produce plots and descriptions for various local and global explanations. Tools for model...1577 days ago
The Global Alliance for Genomics and Health (GA4GH)
The Global Alliance for Genomics and Health (GA4GH) is a policy-framing and technical standards-setting organization, seeking to enable responsible genomic data sharing w...1561 days ago