DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found th...1159 days ago
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GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis o...2942 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...equencing), whose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness of both. GAM-NGS does not rely on global alignment: regions of the two...2707 days ago
CABOG: Celera Assembler with Best Overlap Graph
...lotypes of one human genome (J. Craig Venter, 2007). It was the first to assemble environmental sequence from the oceans (Sargasso Sea in 2004 and Global Ocean Sampling in 2007). It w...2560 days ago
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AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megaba...2551 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
...e used for the development of prediction model. The standalone version (Linux-based command-line) of RNAcon is freely available for the global scientific community. Refere...2497 days ago