InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity amo...ific CNAs, and haplotype information to identify the optimal breakpoint graph representing cancer genomes....1088 days ago
RNA-Seq De novo Assembly Using Trinity
...e sequence data into many individual de Bruijn graphs, each representing the trans...a given gene or locus, and then processes each graph independently to extract full...nto clusters and constructs complete de Bruijn graphs for each cluster. Each clust...2957 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize...ologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements....p; More at http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html2942 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of...2921 days ago
2787 days ago
2738 days ago
2697 days ago
2697 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...) are identified through reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an optimal&n...2686 days ago
2685 days ago