2654 days ago
2637 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...yotic or vertebrate species, on a usual computing server, and even works on desktop/laptop computers. It adopts a novel graph based approach: it builds a succinct De Bruijn Graph (DBG) representing the short...2574 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates...2539 days ago
2533 days ago
2504 days ago
Omega2: metagenome assembly pipeline
...using a prefix/suffix hash table. The overlap graph of reads was simplified by re...d on minimum cost flow analysis of the overlap graph and then merged to contigs an...nformation. In comparison with three de Bruijn graph assemblers (SOAPdenovo, IDBA-...2483 days ago
2483 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
...oding and ncRNAs and RandomForest-based prediction model for the classification of ncRNAs into different classes. The structural information based graph properties were used for the...2476 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...es. Incorporating fosmid ends recovers entire chromosomes. Meraculous relies on an efficient and conservative traversal of the subgraph of the k-mer (deBruijn) graph of oligonucleotides with uniq...2363 days ago