Results for "Graph Theory"
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Phylogenomics/Phylogenetic website
Welcome to phylobabble.org, a discussion forum for phylogenetic theory and applications. The primary goal of this...3692 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-...s, and haplotype information to identify the optimal breakpoint graph...1107 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Je...e data into many individual de Bruijn graphs, each representing the trans...ene or locus, and then processes each graph independently to extract full...ers and constructs complete de Bruijn graphs...2975 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary re...mologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements....sp; More at http://www.atgc.org/PhyloGraphe...2961 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data se...2939 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. pro...ining. Currently, there is no software that can take full advantage of network theory approaches for the analysis o...
2879 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mamma...index (FMD-index) as the key data structure. It is inspired by the string graph&...
2805 days ago
- Seven Bridges is the biomedical data analysis company accelerating breakthroughs in genomics research for cancer,...uild self-improving systems to analyze millions of genomes, including the Graph...
2756 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia pro...
2715 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of...
2715 days ago
