Results for "Greengenes database"
Bookmarks
This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand...2907 days ago
- DarkHorse is a bioinformatic method for ra...al ortholog matches from a reference database of amino acid sequences, then...to the phylogenetic distance between database match sequences and the query...ature of the DarkHorse HGT Candidate database is the opportunity to explore...
2888 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promote...loped in Java and JavaScript, utilizing an Apache Tomcat web server and MySQL database and the source code is availa...
2883 days ago
- Kaiju is a program for the taxonomic classifica...onomy by comparing it to a reference database containing microbial and vira...subset of the non-redundant protein database nr used by NCBI BLAST, option...ample, only 10 GB RAM with a protein database comprising 4821 microbial gen...
2883 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignm...he data and tools presented by greengenes can assist the researcher in...u are an ARB user, you can use greengenes to keep your own local database current.
2881 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than B...;PALS >Whole-genome alignment. PREFAB >Protein Reference Alignment Database. MSA benchmark collectio...2875 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the hea...deler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build,...
2831 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational database. It was developed by the bioi...
2811 days ago
- Watch out: only a few files are counted in coverage statisti...h --viral n, for example, downloads the bacterial database. Other available subcommands...nload genomes update update viral/bacterial database index index genomes wo...
2778 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number of full genome sequence...
2711 days ago
