Results for "HGT"
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...ely related organisms. One unique and powerful feature of the DarkHorse HGT Candidate database is the opportunity to explore the phylogenetic background of potential HGT donors as well as recipients....2876 days ago
- ...genome architecture. Existing HGT detection algorithms rely on...s recipient genome. Detecting HGT between closely related speci...great importance in detecting HGT between congeneric species or...ia, is considered a validated HGT product. We first employed th...
2876 days ago
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Top-level pages
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of...ukaryotic species to gain a gene by HGT, foreign DNA must enter the h...wing are the popular tool to detect HGT in genomes: T-REX /&nbs...TREE-PUZZLE / 5.3.rc16 HGT detection / download &am...852 days ago
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- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid sequences, then using these matches to calculate a lineag...
Tags: Bioinformatics, HGT, Genes, Horizontal, Transfer, Method, Tools, DarkHorse
2876 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or phylogenetic tree-building procedures to improve accu...Tags: DarkHorse, method, genome-wide, prediction, horizontal, gene, transfer, HGT
2510 days ago
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