Results for "HMM"
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Barrnap: Bacterial ribosomal RNA predictor
...chondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMMER 3.1 for HMM searching in RN...2544 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...l composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection...2303 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy and read length. Several studies require long and accu...2079 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
...tigs in Genbank format and FASTA files containing CDSs. It uses several state of the art inference methods for orthology inference, either based on HMM profiles or de novo inference...68 days ago
