Points: 553
LEGE
To #uninstall #phonelink in window run it in poweshell: Get-AppxPackage Microsoft.YourPhone -AllUsers | Remove-AppxPackage
(541 days ago)
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Discuss all about bioinformatics !
- LEGE published a blog post Courses to Get You Started with Bioinformatics
- LEGE published a blog post Top Journals in Bioinformatics: How to Choose Where to Publish & Why It Matters
New BLAST Core Nucleotide Database (core_nt)
By LEGE 570 days agohttps://ncbiinsights.ncbi.nlm.nih.gov/2024/07/18/new-blast-core-nucleotide-database/Cleaner BLAST Databases for More Accurate Results
By LEGE 682 days agoRemoving contaminated sequences using NCBI quality assurance toolsBlast on Docker, Google Cloud, Amazon Cloud
By LEGE 2066 days agoAs announced in a previous post, we offer a Docker version of NCBI BLAST+ that you can use locally or on the Google Cloud where we have pre-loaded BLAST databases. We are happy to announce that the same functionality is now available on the...
Jit
5557 points
5557 points
Jitendra Narayan
2550 points
2550 points
Rahul Nayak
2300 points
2300 points
Neel
1639 points
1639 points
BioStar
1266 points
1266 points
- By LEGE 541 days agoTo #uninstall #phonelink in window run it in poweshell: Get-AppxPackage Microsoft.YourPhone -AllUsers | Remove-AppxPackage
- By LEGE 638 days ago#NCBI is planning to push some updated on #taxonomy #classification https:/
/ ncbiinsights.ncbi.nlm.nih.gov/ 2024/ 06/ 04/ changes-ncbi-taxonomy-classifications/ - By LEGE 744 days agoWalk-in Bioinformatics interview @ https:/
/ cdri.res.in/ pdf/ recruitment/ Advt_01_2024_Project_Staff.pdf - By LEGE 791 days ago
Python script to find all possible repeats in a DNA string !
By LEGE 444 days agoPython script for treemap using Python's Plotly library
By LEGE 446 days agoBacterial Comparative Genomics Pipeline Bash Script
By LEGE 446 days ago
A Bioinformatician’s Lament
By LEGE 281 days ago"I have a presentation tomorrow," they say, With hopeful eyes, like it’s all child's play. As if results bloom overnight, full-grown— Not wrangled from chaos, and error-prone.
WinPCA
By LEGE 164 days agogithub.com - A package for windowed principal component analysis. WinPCA performs principal component analyses (PCA) in sliding windows along chromosomes. Both hard-called genotypes (input: VCF or TSV) or genotype likelihoods (input: VCF, TSV or BEAGLE)...Termal: a fast and interactive terminal-based viewer for multiple sequence alignments
By LEGE 164 days agogithub.com - termal, a fast, interactive, terminal-based viewer for multiple sequence alignments (MSAs), designed for use on remote systems such as high-performance computing (HPC)...HiTE: a fast and accurate dynamic boundary adjustment approach for full-length Transposable...
By LEGE 166 days agogithub.com - HiTE is a Python software that uses a dynamic boundary adjustment approach to detect and annotate full-length Transposable Elements in Genome Assemblies. In comparison to other tools, HiTE demonstrates superior performance in detecting a...PeGAS: A Comprehensive Bioinformatic Solution for Pathogenic Bacterial Genomic Analysis
By LEGE 186 days agogithub.com - This is PeGAS, a powerful bioinformatic tool designed for the seamless quality control, assembly, and annotation of Illumina paired-end reads specific to pathogenic bacteria. This tool integrates state-of-the-art open-source software to provide a...
Courses to Get You Started with Bioinformatics
By LEGE 156 days agoBioinformatics is now at the heart of modern biology and medicine. From decoding genomes and predicting antimicrobial resistance, to developing personalized medicine and advancing evolutionary research, computational skills are no longer optional —...Top Journals in Bioinformatics: How to Choose Where to Publish & Why It Matters
By LEGE 161 days agoBioinformatics is a rapidly growing field at the intersection of biology, computer science, mathematics, and statistics. As data volumes increase, as well as the diversity of data types (genomics, proteomics, metabolomics, imaging, single‑cell data,...Trust But Verify: Sequencing Your Cell Lines Might Reveal an Uninvited Guest
By LEGE 275 days agoHigh-throughput sequencing has become indispensable in cell biology, enabling detailed insights into chromatin structure, gene expression, and regulatory dynamics. Yet, when faced with unexpectedly low mapping rates to the human genome,...Basics of DESeq2: Differential Expression Made Simple
By LEGE 282 days agoDESeq2 is a powerful and widely-used R package that identifies differentially expressed genes (DEGs) from RNA-seq data. Whether you're comparing treated vs untreated samples, disease vs healthy conditions, or wild-type vs mutant strains, DESeq2...
The Sheppard Lab
Category: Bioinformatics
PI: Samuel K. Sheppard, Professor in Pathogen Genomics & Evolution
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Libraries or management tools for high throughput sequencing data
Last updated 518 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...-
Bioinformatics Lecture Notes
Last updated 521 days ago by LEGEStudy Resources for ECM3413 - Bioinformatics Contents General Information Lecture Slides Past Exam Paper Continuous Assessments Suggested Reading List General Information This module runs in Semester 2. It is... -
Tools to access the quality of your assembled genome !
Last updated 574 days ago by LEGEFASTA VALIDATOR + SEQKIT RMDUP: FASTA validation GENOMETOOLS GT GFF3VALIDATOR: GFF3 validation ASSEMBLATHON STATS: Assembly statistics GENOMETOOLS GT STAT: Annotation statistics NCBI FCS ADAPTOR: Adaptor contamination pass/fail NCBI...
Question: Any good bioinformatics suggestions !
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
