Results for "HP"
Bio-Scripts
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2154 days ago
Perl script to count the number of files in a directory with regex
..._C210_","_C211_","_C21_","_C24_","_C27_","_E2B2_","_H004_","_H4-28_","_Hprim34_","_Hprim53_","_HPRIM1_","_HPRIM21_"..._H4-02_","_H4-04_","_HPRIM15_","_HPRIM19_","_B39_","_C3B1_","_C3T1_","_HPRIM16_","_A21_","_A22_","_A32_...2237 days ago
- ...filter git:(master) ls AUTHORS COPYING ntHashIterator.hpp autogen.sh CountingBloomFilter.hpp pythonInterface BloomFilte...configure NEWS autom4te.cache configure.ac nthash.hpp BloomFilter.hpp COPYING...
2151 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda-forge busco=4.0.6 Collecting package metadata (repodata.json): done Solving environment: done ## Packa...1453 days ago
Installing pb-assembly on Linux !
...-pattern fc_run fc-cache fc_filt_hp.py fc_phased_...fc-query fc_unzip_gen_gfa_v1.py fc_coords2hp.py fc-list...2034 days ago
- jit@jit-HP-Pro-3335-MT:~/Downloads$ git clone https://github.com/ugexe/zef.git...53 MiB/s, done. Resolving deltas: 100% (6290/6290), done. jit@jit-HP-Pro-3335-MT:~/Downloads$ cd zef jit@jit-HP-Pro-3335-MT:~/Downloads/zef$...
1551 days ago
Install Nucmer on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install mummer [sudo] password for jit: Reading package lists... Done Building dependency tree Reading...1550 days ago
Install python pip and numpy on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install python-pip Reading packa...5~rc1-1) ... Processing triggers for man-db (2.8.3-2ubuntu0.1) ... jit@jit-HP-Pro-3335-MT:~/Downloads/MitoH...1550 days ago
Install miniasm in Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install miniasm Reading package lists... Done Building dependency tree Reading state information... Done...1550 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R [sudo] password for jit: R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 T...1550 days ago
