Jit
Enthusiast computational biologist with business dream !!!
Our Sponsors
BloomFilter
By Jit 2144 days ago
➜ Tools git:(master) ✗ git clone git://github.com/bcgsc/bloomfilter.git
Cloning into 'bloomfilter'...
remote: Counting objects: 867, done.
remote: Compressing objects: 100% (11/11), done.
remote: Total 867 (delta 7), reused 12 (delta 4), pack-reused 852
Receiving objects: 100% (867/867), 330.70 KiB | 0 bytes/s, done.
Resolving deltas: 100% (512/512), done.
Checking connectivity... done.
➜ Tools git:(master) ✗ cd bloomfilter
➜ bloomfilter git:(master) ls
AUTHORS COPYING ntHashIterator.hpp
autogen.sh CountingBloomFilter.hpp pythonInterface
BloomFilter.hpp Examples README
BloomFilterUtil.h KmerBloomFilter.hpp README.md
BloomMap.hpp Makefile.am swig
ChangeLog NEWS Tests
configure.ac nthash.hpp
➜ bloomfilter git:(master) swig -Wall -c++ -perl5 BloomFilter.i
Unable to find file 'BloomFilter.i'.
➜ bloomfilter git:(master) git submodule update --init
➜ bloomfilter git:(master) ./autogen.sh
+ aclocal
+ autoconf
+ autoheader
+ automake -a
configure.ac:19: installing './compile'
configure.ac:6: installing './config.guess'
configure.ac:6: installing './config.sub'
configure.ac:8: installing './install-sh'
configure.ac:8: installing './missing'
Makefile.am: installing './INSTALL'
Tests/AdHoc/Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
➜ bloomfilter git:(master) ✗ ./configure && make
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for ranlib... ranlib
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for size_t... yes
checking for g++ option to support OpenMP... -fopenmp
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Tests/Unit/Makefile
config.status: creating Tests/AdHoc/Makefile
config.status: creating config.h
config.status: executing depfiles commands
make all-recursive
make[1]: Entering directory '/home/urbe/Tools/bloomfilter'
Making all in Tests/AdHoc
make[2]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
Making all in Tests/Unit
make[2]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[2]: Entering directory '/home/urbe/Tools/bloomfilter'
make[2]: Leaving directory '/home/urbe/Tools/bloomfilter'
make[1]: Leaving directory '/home/urbe/Tools/bloomfilter'
➜ bloomfilter git:(master) ✗ pwd
/home/urbe/Tools/bloomfilter
➜ bloomfilter git:(master) ✗ ./configure --prefix=/home/urbe/Tools/bloomfilter && make install
zsh: correct 'install' to 'INSTALL' [nyae]? n
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for ranlib... ranlib
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for size_t... yes
checking for g++ option to support OpenMP... -fopenmp
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Tests/Unit/Makefile
config.status: creating Tests/AdHoc/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
Making install in Tests/AdHoc
make[1]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
make[2]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
make[1]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
Making install in Tests/Unit
make[1]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[2]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[1]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[1]: Entering directory '/home/urbe/Tools/bloomfilter'
make[2]: Entering directory '/home/urbe/Tools/bloomfilter'
make[2]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/home/urbe/Tools/bloomfilter/share/doc/bloomfilter'
/usr/bin/install -c -m 644 README.md '/home/urbe/Tools/bloomfilter/share/doc/bloomfilter'
make[2]: Leaving directory '/home/urbe/Tools/bloomfilter'
make[1]: Leaving directory '/home/urbe/Tools/bloomfilter'
➜ bloomfilter git:(master) ✗ pwd
/home/urbe/Tools/bloomfilter
➜ bloomfilter git:(master) ✗ ./configure --with-boost=/boost/path --prefix=/home/urbe/Tools/bloomfilter && make install
zsh: correct 'install' to 'INSTALL' [nyae]? n
configure: WARNING: unrecognized options: --with-boost
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for ranlib... ranlib
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for size_t... yes
checking for g++ option to support OpenMP... -fopenmp
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Tests/Unit/Makefile
config.status: creating Tests/AdHoc/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --with-boost
Making install in Tests/AdHoc
make[1]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
make[2]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
make[1]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/AdHoc'
Making install in Tests/Unit
make[1]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[2]: Entering directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[1]: Leaving directory '/home/urbe/Tools/bloomfilter/Tests/Unit'
make[1]: Entering directory '/home/urbe/Tools/bloomfilter'
make[2]: Entering directory '/home/urbe/Tools/bloomfilter'
make[2]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/home/urbe/Tools/bloomfilter/share/doc/bloomfilter'
/usr/bin/install -c -m 644 README.md '/home/urbe/Tools/bloomfilter/share/doc/bloomfilter'
make[2]: Leaving directory '/home/urbe/Tools/bloomfilter'
make[1]: Leaving directory '/home/urbe/Tools/bloomfilter'
➜ bloomfilter git:(master) ✗ ls
aclocal.m4 config.status Makefile.in
AUTHORS config.sub missing
autogen.sh configure NEWS
autom4te.cache configure.ac nthash.hpp
BloomFilter.hpp COPYING ntHashIterator.hpp
BloomFilterUtil.h CountingBloomFilter.hpp pythonInterface
BloomMap.hpp depcomp README
ChangeLog Examples README.md
compile INSTALL share
config.guess install-sh stamp-h1
config.h KmerBloomFilter.hpp swig
config.h.in Makefile test-driver
config.log Makefile.am Tests
➜ bloomfilter git:(master) ✗
