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This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an intermed...general introduction to programming concepts. More at http://tldp.org/LDP/abs/html...3018 days ago
- Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you through...erkeleydb and MySQL adaptors. More at http://elp.ucdavis.edu/tutorial/tutorial.html
3017 days ago
- Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html
3007 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned...
2998 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homol...ents. More at http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html2970 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/m...o it. More at http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html
2970 days ago
- SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA...pbau.ru/en/spades. Manual at http://spades.bioinf.spbau.ru/release3.7.1/manual.html
2957 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which i...for Data Analysis Excel workarounds, adding gene annotation, X-Y plots tips, etc....2950 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the dis...levant parameter is invoked. More at http://mrfast.sourceforge.net/manual.html2950 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the...2933 days ago
