GenomeRing: alignment visualization based on SuperGenome coordinates
...till allows for a quick and comprehensive interpretation of all important genomic variations together with various supplemental data, which may be highly heterogeneous, remains a chal...2673 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...e found in downloads.----- PBJelly -----Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768PBJelly is a highly automated pipeline that align...2633 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...d to high precision, our theoretical analyses and computer simulations indicate that our results are reasonably accurate and that they will become highly accurate in the foreseeable f...2553 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...put for downstream synteny-based analyses, all in an intuitive and easy-to-use web-based interface. We believe that Synteny Portal will serve as a highly valuable tool that will enabl...2547 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature...w nanopore and PacBio reads without requiring error correction, for which a highly sensitive overlapper is requi...2533 days ago
2511 days ago
slacTree: SVG Large Annotated Circular Tree drawing
...easy to run, and easy to further customize SVG is used because it is a scalable format allowing for very small representations of entire trees or highly magnified regions with unlimi...2507 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast,...2364 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...thod we were able to perform a hybrid error correction of the nanopore reads using complementary MiSeq data and produce a de novo assembly that is highly contiguous and accurate: the...2358 days ago
Musket: a multistage k-mer spectrum based corrector
...s multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution...2351 days ago