2594 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...a series of programs that we developed: ABACAS, that is able to contiguate contigs from a de novo assembly against a closely related reference. IMAGE, an iterative approach for cl...2543 days ago
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2480 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or...2344 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
...addition to simply running evolver, eSC also automatically creates statistical summaries of the simulation as it runs including text and image files. Also included are conv...2332 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...with a tool (also called SMASH). For visualization, SMASH outputs a SVG image, with an ideogram output arch...represented with several HSV values (only value varies). The following image, illustrating the information...2320 days ago
xmatchview: smith-waterman alignment visualization
...nteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the alignment in a variety of image formats. xmatchview and xmatc...2313 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Serials of algorithms and methodologies have been developed and integrated to analy...2287 days ago