Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...of the 5' ends in the Ecogene data set are located correctly). Specificity: Prodigal's false positive rate compares favorably with other gene identification programs, and usually falls u...2678 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...information from dense genotype data. It describes ancestry in an efficient way suitable for a range of further analyses, including population identification and admixture dating.2631 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...nomes. ----- PBHoney -----Read The Paperhttp://www.biomedcentral.com/1471-2105/15/180/abstractPBHoney is an implementation of two variant-identification approaches designed to exploi...2617 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undem...2502 days ago
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CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes including insertion/del...2353 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...ted to a series of downstream classification steps. This work has been accepted for publication: MacDonald NJ, Parks DH, and Beiko RG. Rapid identification of taxonomic assignments. Acc...2344 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2344 days ago
Computational Genomics: Applied Comparative Genomics
...the techniques will be broadly applicable across the tree of life. The topics will include genome assembly & comparative genomics, variant identification & analysis, gene expressi...2343 days ago