Results for "Identity"
Bookmarks
Next generation sequencing(NGS) books
Employing different technologies, the purpose of NGS platform is to decode the identity or modification on the nucleotides. NGS platforms evolve quickly and capture the main stream. This bookmark is created to provide NGS online books links.3643 days ago
- ...type calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection....ning and S R Browning (2013). Improving the accuracy and efficiency of identity-by-descent detection in popul...
2762 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...f any length in Multi-FASTA format to produce an improved contig set based on OLC based assembly. All overlap parameters (Minimum Overlap Length, Identity, etc) are user-declarable at...2709 days ago
- ...between adjacent contigs. Contigs are aligned globally (end-to-end) onto reference chromosomes, ignoring: matches not satisfying cut-offs (--identity and --overlap) sub...
2708 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...the contig N50 length is more than ten-times greater than an Illumina-only assembly (678kb versus 59.9kbp), and has greater than 99.88% consensus identity when compared to the referenc...2364 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ghest quality results, Contains a fully integrated data filtering engine capable of selecting relevant hits with user-defined criteria (E-Value, identity, coverage, alignment length,...2362 days ago
- ...ence against a reference region if and only if its estimated alignment identity is above a specified threshol...sp;and MinHash. This is then converted to an estimate of sequence identity using the Mash dist...
2350 days ago
Porechop: tool for finding and removing adapters from Oxford Nanopore reads
...is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity. Porechop also supports demu...2183 days ago
HALC: High throughput algorithm for long read error correction
...throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same species with a relatively low identity requirement so that a long re...2173 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...nment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs sha...engine to compute the orthologous mappings and alignment identity estimates. Based on our exper...2137 days ago
