Results for "Image data analysis"
Bio-Scripts
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...2155 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [opt...plitting Sequence data may be used in raw form or...Filter used in early 1000 Genomes data: no...Output to stdout, all split data bec...
2141 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently comp...............no. auto::coverage - Are coverage analysis tools installed...Negativ.....done. gen::config_pm - Record configuration data for later retrieval......done. O...1551 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...embly/transrateSTAT/Trinity/contigs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis results to assemblies.csv
2137 days ago
- # list sample names & download URLs. sample_links = {"ERR458493": "https://osf.io/5da...LES=sample_links.keys() # download yeast rna-seq data from Schurch et al, 2016 stud...wnload_all: input: expand("rnaseq/raw_data/{sa...
1530 days ago
- set -e echo "Running reapr version 1.0.18 pipeline:" echo "/home/urbe/Tools/Reapr_1....adinetaGapFilled.gapfilled.iteration1.fa /home/urbe/DATA/OriginalReads/ANature/GC02756...26.HiSeq2000.FCB.lane1.gcap_dev.R1.fastq /home/urbe/DATA/Ori...
2113 days ago
Perl script to find palindromic pattern !
#!/usr/bin/perl use strict; use warnings; use strict; my %invert; @invert{ qw[ A C G T ] } = qw[ T G C A ];...), substr( $in, $p1-$pals, ($pals+1)*2 ), $p1-$pals; } } __DATA__...2113 days ago
- ...run using Google cloud dataproc commands...on reactions. BwaMemIndexImageCreator Create a BWA-MEM index image file for use with GATK BWA tools...concordance between genotype data of one samples in each of two VCF...
2090 days ago
- ➜ upgrade_oh_my_zsh Updating Oh My Zsh remote: Counting objects: 484, done. remote: Compressing objects: 100%...emoji/README.md | 6 +- plugins/emoji/emoji-data.txt...
2089 days ago
Installing pb-assembly on Linux !
...xcb-util-image/0.4.0-foss-2016a libdrm/2.4....all bwa Fetching package metadata ............. Solving packag...e currently available SMRT(R) Analysis builds. While # # efforts ha...e currently available SMRT(R) Analysis builds. While # # efforts ha...2049 days ago
