Results for "Interactive"
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AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotations and phylo- genetic information are supported. The user-friendly, web-browser based an...Tags: AliTV, interactive, visualization, whole, genome, comparisons
2304 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics. Dot supports the output of MUMmer’s nucmer aligner the most commonly used software method for alig...Tags: Dot, interactive, viewer, genome-genome, comparison
2300 days ago
- BioCircos.js is an open source interactive Javascript library which provides an easy way to interactive display biological data on the web. It implements a raster-based SVG visualization using the open source Javascript framework jquery.js. BioCircos.js is multiplatform a...
Tags: BioCircos.js, open, source, interactive, Javascript, library, interactive, display, biological, data, web
2295 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demoTags: Generate, interactive, codon, usage, plots
2255 days ago
Epiviz: an interactive visualization tool for functional genomics data.
Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It also includes data from the...Tags: Epiviz, interactive, visualization, tool, functional, genomics, data
2124 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
Bokeh is an interactive visualization library that targets modern web browsers for presentation. Its goal is to provide elegant, concise construction of versatile graphics, and to extend this capability with high-performance interactivity over very large or streaming datasets. Bokeh can help anyo...Tags: Bokeh, interactive, visualization, library, targets, modern, web, browsers, presentation
2092 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can be efficiently compared. The tool includes funct...Tags: S-plot2, interactive, two-dimensional, heatmap, capture, similarities, dissimilarities, nucleotide, genomic, sequences
2043 days ago
BamView: a free interactive display of read alignments in BAM data files
To run the application on UNIX from the downloaded jar file run the UNIX: java -mx512m -jar BamView.jar and extra command line options are given when '-h' is used: java -jar BamView.jar -h BAM files can be specified on the command line with the '-a' option: java -mx512m -jar BamView.jar -a p...Tags: BamView, free, interactive, display, read, alignments, BAM, data, files
2001 days ago
Hawkeye: an interactive visual analytics tool for genome assemblies
Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an a...Tags: Hawkeye, interactive, visual, analytics, tool, genome, assemblies, visualization
1948 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive linked-visualizations and is a...Tags: ZENBU, collaborative, omics, data, integration, interactive, visualization, system
1945 days ago
