MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome a...lysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of inte...2287 days ago
RNA-seq Analysis Workshop Course Materials
RNAseq can be roughly divided into two "types": Reference genome-based - an assembled genom....g., Hyacinth macaw); Reference genome-free - no genome assembly for the species of inte...2132 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was...o allow comparisons between data sets Statistical analysis of data to find regions of inte...2062 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimi...l includes functionality to extract, analyze, and automate BLAST queries of regions of inte...2045 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimi...l includes functionality to extract, analyze, and automate BLAST queries of regions of inte...2041 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
OAT uses OrthoANI to measure the overall similarity between two genome sequences. ANI and Orth...User Interface that allow researchers to calculate OrthoANI values between genomes of inte...1970 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by the gen...2014 — Users of Distruct may also find CLUMPP and CLUMPAK of inte...1867 days ago
1565 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
A Python library dedicated to NGS analysis (e.g., tools to visualise standard NGS formats)....Standalone applications: sequana_coverage ease the extraction of genomic regions of inte...1543 days ago
Updated science-wide author databases of standardized citation indicators
There was great interest in the databases of standardized citation metrics across all scientists and scientific disciplines [1], and many scientists urged us to provid...1265 days ago