Results for "Ka"
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Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conven...de structure, adding efficient tools to support the cycle of package development. With devtools, developing a package becomes so easy that it wil...2940 days ago
- ...y heterozygous diploids from massively parallel shotgun sequencing data. The latest version is 1.2.4. To cite Platanus, please use the following: Kajitani R, Toshimoto K, Noguchi...
2930 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulatio...2923 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for geno...
2923 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with se...
2909 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These module...
2898 days ago
- ...ustersBioconductor version: Release (3.3)This package implements methods to analy...and He Q (2012). “clusterProfiler: an R package for comparing biological th...6(5), pp. 284-287.InstallationTo install this package, start R and enter:## try h...
2896 days ago
- ...lymorphisms and sequencing errors in read names. One can evaluate the accuracy of a mapper or a SNP caller with wgsim_eval.pl that comes with the package.
2889 days ago
- Kaiju is a program for the taxonomic class...d viral protein sequences. By default, Kaiju uses either the available...ly also including fungi and microbial eukaryotes. Kaiju translates read...base comprising 4821 microbial genomes. Kaiju can also be used for query...
2885 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2855 days ago
