Results for "Ka"
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Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus a...2836 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which e...
2834 days ago
- ...files are typically intended to be post-processed (i.e., filtered) as an attempt to remove false positives or otherwise problematic sites. The R package vcfR provides tools to faci...
2833 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed...programs from four widely used packages: BLAT, BLASTALL (including...ML (including codeml and yn00) and KaKs_Calculator (including 10 su...to compute the substitution rates (Ka, Ks and Ka/Ks) between a well...
2822 days ago
Sushi: An R/Bioconductor package for visualizing genomic data
Sushi: An R/Bioconductor package for visualizing genomic data2821 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art perfor...
1967 days ago
- ...and display basepairs in colour and to also visualize corresponding multiple sequence alignments and co-variation information.R4RNA is the R package powering R-chie, available...
2819 days ago
- ...n sequencing (NGS) data. NGS technologies brought a dramatic shift in the world of sequencing. Merely five years back, genome sequencing of higher eukaryotes used to be very expensi...
2816 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets w...ls about the overall architecture and external dependencies of the Sybil package.
2814 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications and websites, or as a vi...2802 days ago
