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Results for "LTR"

Bookmarks

• • Poonam Mahapatra@poonam

  

  “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

  ...sposable elements, retrieve their sequences and get some quantitative information. Assemble RepeatMasker hits into complete TE copies, including LTR-retrotransposon Retrieve cor...

  2176 days ago

• • Neelam Jha@neelam

  

  LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.

  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The...an algorithm is used to adjust the ends of LTR pair candidates to get alignm...mation of TG..CA box and TSRs and reliable LTRs are selected. Next, LTR_FIND...

  1953 days ago

• • Neelam Jha@neelam

  

  LTR_retriever: accurately identifies and annotates LTR retrotransposons and use LAI to evaluates the continuity of genome assemblies.

  LTR_retriever is a command line program (in Perl) for accurate identification of LTR retrotransposons (LTR-RTs) from outputs of LTRharve...and/or MGEScan-LTR and generating non-redundant LTR-RT library for genome annotat...

  1953 days ago