Results for "LTR_Finder"
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LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length L...ox and TSRs and reliable LTRs are selected. Next, LTR_FINDER tries to identify PBS, PPT an...o process frame shift. For other protein domains, LTR_FINDER calls ps_scan (from PROSITE,&...1953 days ago
- LTR_retriever is a command line program (in Perl) for accurate identification of LTR retrotransposons (LTR-RTs) from outputs of LTRharvest, LTR_FINDER, and/or MGEScan-LTR and generating...
1953 days ago
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Computational resources for TE discovery and TE detection
...edu/cgi-bin/evolution/ltr.pl FINDMITE http://jaketu.biochem.vt.edu/dl_software.htm HMMER http://hmmer.janelia.org/ LTR_FINDER http://tlife.fudan.edu.cn/ltr_finder/ LTR_STRUC http://www.genet...2288 days ago
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LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algorithm and extends them to long highly similar pairs. Then Smith-Waterman algorithm is used to adjust the ends of LTR ...Tags: LTR_Finder, efficient, program, find, full-length, LTR, retrotranspsons, genome, sequences
1953 days ago
