Opera: An optimal genome scaffolding program
...alled OPERA-LG has been re-engineered with features for the assembly of large and complex genomes.Song Gao,...ia and Niranjan Nagarajan. OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genom...2364 days ago
2362 days ago
kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics2354 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer...nt with the assembly process. Meraculous achieves high performance with large datasets by utilizing lightwe...2340 days ago
2334 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity...2325 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIG...2320 days ago
MUMmer4: A fast and versatile genome alignment system
...y realistic length. We show that as a result of these enhancements, the nucmer program in MUMmer4 is easily able to handle alignments of large genomes;2296 days ago
2284 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quic...2215 days ago