Results for "Lateral gene transfer PLOS"
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DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in t...s- between pairs of ancestral genes or gene domains.Ancestral ge...s are deduced from reconciled gene trees in a context of birth,...peciation, duplication, loss, transfer, which are either given as in...2591 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you throu...ol Assembly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly Gene...2587 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a...r currently contains a large collection of diverse gene set...ntly contains 180 184 annotated gene sets from 102 gene...2578 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene...
2573 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride&nb...s in bacterial genomes contain useful, albeit weak, phylogenetic...vident that it cannot replace other alignment-based phylogene...
2571 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we dev...fic Bioscience assemblies (PacBio) can be found here. RATT, a tool to tran...2563 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, an...bial metabolic and non-metabolic pathways, ERGO™ assigns functions to genes, integrates gene...2559 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal...level process that includes prediction of protein-coding genes, a...units such as structural RNAs, tRNAs, small RNAs, pseudogene...2559 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-...o facilitates the real-time analysis of positional information such as gene ordering and the detection of gene...2552 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient an...program utilizes tBLASTn and BLASTn algorithms to map genes from the reference g...is to annotate the majority of the new genome’s gene...2546 days ago
