DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The metho...ombined with genomic signature and/or phylogenetic tree-building procedures to im...or retrospective assessments of horizontal tran...2522 days ago
2519 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local...ated species. Input formats, automated data upload from the UCSC Genome Browser, gene...2494 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruc...et of genomes represented as sequences of genes (or synteny blocks) and prod...genomes at the internal nodes of the phylogenetic...interest. Since version 2 MGRA supports gene...2489 days ago
2377 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome sub...e within 10 minutes, with rich information such as pseudogenes, translation exceptions, and orthologous gene...2377 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensio...nd chronologicaly along evolutionary time. Once a query gene has...e structure in all the ancestral species within the phylogene...2373 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and betwee...uding insertion/deletion and inversion could cause the degenerati...Java software CHSMiner that detects CHSs based on shared gene...2373 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a metho...uch more complete representation of the features of the genome and correctly assembles gene...2362 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the course em...ude genome assembly & comparative genomics, variant identification & analysis, gene...2362 days ago