Run Pango on your multifasta file !
...d model: /home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/site-packages/pangoLEARN/data/decisionTree_v1.joblib Header file: /home/jnarayan/...3:10:08 /home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/site-packages/sklea...885 days ago
Identify genome-wide synteny with LASTZ alignment
...d on LASTZ alignment. Step1:Mask the repeat sequences for both genomes and chromosomes. RepeatMasker -pa 40 -nolow -norna -gff -xmall -lib custom.TE.lib_for_rice.fa AAChr1.txt Repeat...515 days ago