CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the...ent proteins, or the nucleotide sequences of different pieces of DNA. The Basic Local Alignment Search Tool (BLAST)...2473 days ago
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Ribbon: Visualizing complex genome alignments and structural variation:
.../genome alignments. Instructions for each data format are available by clicking on "instructions" in each tab on the right. Local installation: You can install Ribbon locally from Github by following th...2346 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ST takes full advantage of recent multi-core personal computers without requiring any additional hardware devices. PLAST stands for Parallel Local Sequence Alignment Search Too...2344 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...that share only some moderately conserved regions and/or have a high frequency of long insertions or deletions. It attempts to combine the best of local and global alignments algorit...2339 days ago
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Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...using variable order motif distributions and captures more reliably the local composition of a sequence com...kov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of t...2306 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that provides an intuitive user interface for phylogenetic analyses and data visualization. I...2234 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
...genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with sever...2186 days ago