GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.htmlFeatures Map...2523 days ago
2511 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
...sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio o...the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a...2367 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2...sp;Tulipseed takes as input alignments files of long reads to sparse short seeds,...a graph and scaffold structures. Tulipbulb adds long read sequencing data to these...2354 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...OLC-based de novo assembler for noisy long reads. It takes all-vs-all re...e bacterial genomes, it is possible to generate long contigs from raw PacBio or ON... MHAP and DALIGNER. Coupled with long-read error correctors and con...2350 days ago
Opera: An optimal genome scaffolding program
...d-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long reads to optimally order and...2350 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...rd Nanopore reads, as existing packages were incapable of assembling the long read lengths (5-50kbp) at suc...ntity when compared to the reference. Furthermore, the assembly with the long nanopore reads presents a muc...2348 days ago
2348 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instructions" in...2348 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...sequences. ACANA is specifically designed for aligning sequences that share only some moderately conserved regions and/or have a high frequency of long insertions or deletions. It a...2341 days ago